Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4236

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12603 and 12604 are separated by 220 nucleotides12604 and 12605 are separated by 674 nucleotides mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,682,242 to 1,685,142 12603 mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1,685,363 to 1,686,839 12604 mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1,687,514 to 1,688,995 12605

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,684,435 - 12603 mRNA_4235 0.76 +0.6
1,684,570 - 12603 mRNA_4235 0.80 -0.2
1,684,686 - 12603 mRNA_4235 0.84 +2.0
1,684,694 + 12603 mRNA_4235 0.85 -0.7
1,684,920 - -1.6
1,684,997 - +2.0
1,685,237 - +0.2
1,685,238 + +0.2
1,685,460 - -0.5
1,685,478 + +0.3
1,685,482 + +0.8
1,685,610 - 12604 mRNA_4236 0.17 -1.1
1,685,611 - 12604 mRNA_4236 0.17 -0.6
1,686,479 - 12604 mRNA_4236 0.76 -1.5
1,686,777 - +0.6
1,686,785 + +0.5
1,686,865 + -1.3
1,686,900 - -1.5
1,686,905 - -0.5
1,686,911 - -1.7
1,686,922 - +0.1
1,686,946 + -1.4
1,686,947 + +0.1
1,686,951 + -0.9
1,686,972 - +0.4
1,686,974 + -2.0
1,686,980 + +0.4
1,687,016 - -1.9
1,687,034 + +0.3
1,687,047 - -0.6
1,687,052 - +0.1
1,687,082 + -0.4
1,687,096 + -1.0
1,687,102 - +0.4
1,687,121 - +0.5
1,687,122 + -0.3
1,687,122 + -0.4
1,687,123 - +0.2
1,687,133 + -0.8
1,687,142 + +0.1
1,687,253 + -1.2
1,687,279 + -0.0
1,687,427 - -1.3
1,687,571 - -0.1

Or see this region's nucleotide sequence