Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4285

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12652 and 12653 are separated by 63 nucleotides12653 and 12654 are separated by 92 nucleotides mRNA_4284: 12652 - KOG2806 Chitinase, at 1,801,203 to 1,803,513 12652 mRNA_4285: 12653 - K18162 NDUFAF5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5, at 1,803,577 to 1,805,345 12653 mRNA_4286: 12654 - K01288 KEX1 carboxypeptidase D, at 1,805,438 to 1,808,326 12654

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,802,762 + 12652 mRNA_4284 0.67 +0.9
1,803,218 - 12652 mRNA_4284 0.87 +1.5
1,803,340 - +1.3
1,803,473 + -0.2
1,803,482 + +1.3
1,803,507 + -1.9
1,805,440 - -0.7
1,805,694 + +0.1
1,805,710 - -1.2
1,805,713 + -1.5
1,805,980 + 12654 mRNA_4286 0.19 -0.6

Or see this region's nucleotide sequence