Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4300

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12667 and 12668 are separated by 268 nucleotides mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1,832,408 to 1,835,999 12667 mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1,836,268 to 1,838,617 12668

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,836,000 + -0.3
1,836,164 + +0.8
1,836,171 + +0.6
1,836,183 + +1.8
1,836,185 - +0.8
1,836,188 + -1.3
1,836,189 + +0.1
1,836,222 + -0.2
1,836,730 + 12668 mRNA_4300 0.20 +0.9
1,836,958 - 12668 mRNA_4300 0.29 +0.8
1,837,073 + 12668 mRNA_4300 0.34 +0.5
1,837,788 + 12668 mRNA_4300 0.65 -1.0
1,838,107 + 12668 mRNA_4300 0.78 -0.7
1,838,808 - -0.8
1,838,818 + -0.1
1,838,835 + +1.3
1,838,919 + -4.6
1,839,019 + +1.3

Or see this region's nucleotide sequence