Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4329

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12696 and 12697 are separated by 677 nucleotides12697 and 12698 are separated by 590 nucleotides mRNA_4328: 12696 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,918,797 to 1,920,453 12696 mRNA_4329: 12697 - KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1), at 1,921,131 to 1,925,118 12697 mRNA_4330: 12698 - K18738 HEK2, KHD1 heterogeneous nuclear rnp K-like protein 2, at 1,925,709 to 1,927,416 12698

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
1,920,458 - -0.6
1,920,470 - +0.4
1,920,488 + +0.2
1,920,491 - -0.2
1,920,609 - +0.6
1,920,614 + -1.5
1,920,616 + -0.3
1,920,637 - -1.9
1,920,646 - +1.7
1,920,781 + -0.8
1,920,924 + -1.1
1,920,928 - -0.3
1,925,054 + -0.1
1,925,074 - +0.0
1,925,212 + +0.6
1,925,219 + -1.6
1,925,347 + +0.2
1,925,357 + -0.9
1,925,477 + -0.9

Or see this region's nucleotide sequence