Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4516

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12883 and 12884 are separated by 79 nucleotides mRNA_4515: 12883 - SUPERFAMILY--SSF51735, at 360,649 to 361,233 12883 mRNA_4516: 12884 - BLAST ketoreductase [Coccidioides immitis RS], at 361,313 to 361,864 12884

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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360,433 + +0.1
360,545 - +0.2
360,577 - -0.9
360,604 + +0.5
360,704 + -0.4
360,749 + 12883 mRNA_4515 0.17 -0.4
361,128 + 12883 mRNA_4515 0.82 -0.5
361,132 - 12883 mRNA_4515 0.83 -0.7
361,590 + 12884 mRNA_4516 0.50 -0.7
361,738 + 12884 mRNA_4516 0.77 -0.8
361,743 - 12884 mRNA_4516 0.78 -1.8
361,746 + 12884 mRNA_4516 0.78 +0.3
361,747 + 12884 mRNA_4516 0.79 -1.3
361,754 - 12884 mRNA_4516 0.80 -0.2
361,754 - 12884 mRNA_4516 0.80 +0.3
361,764 + 12884 mRNA_4516 0.82 +0.1
361,886 - +0.0
361,905 - -0.3
361,910 - -0.6
361,919 + -0.9
361,924 + +0.4
362,050 - -1.5
362,069 + +0.5
362,195 - -3.8
362,224 - -0.1
362,226 + +0.8
362,229 - +0.4
362,231 + -2.0
362,249 + -0.0
362,280 + -1.1
362,474 - -0.9

Or see this region's nucleotide sequence