Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4569

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12936 and 12937 are separated by 155 nucleotides12937 and 12938 are separated by 217 nucleotides mRNA_4568: 12936 - Hypothetical Protein, at 485,805 to 489,325 12936 mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489,481 to 490,955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491,173 to 492,372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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488,525 + 12936 mRNA_4568 0.77 -0.2
488,662 + 12936 mRNA_4568 0.81 -0.8
488,954 - 12936 mRNA_4568 0.89 -0.1
489,115 + -1.0
489,246 - -0.3
489,812 + 12937 mRNA_4569 0.22 +0.7
490,963 - -1.4
490,972 + -0.2
490,976 + -1.4
490,980 + -0.3
490,983 - -3.6
490,990 + -2.0
491,029 + -1.8
491,030 - -1.5
491,040 + -1.3
491,041 - -1.4
491,133 - +0.8
491,145 + +0.7
491,150 - -0.1
491,181 + -0.3
491,193 + -0.4
491,199 - -0.7
491,280 + +0.3
491,314 + 12938 mRNA_4570 0.12 -2.5
491,318 - 12938 mRNA_4570 0.12 -0.4
491,442 - 12938 mRNA_4570 0.22 -2.3
491,453 - 12938 mRNA_4570 0.23 -1.7
491,542 - 12938 mRNA_4570 0.31 -2.0
491,568 - 12938 mRNA_4570 0.33 -0.6
491,807 - 12938 mRNA_4570 0.53 -2.3
491,824 + 12938 mRNA_4570 0.54 -1.1

Or see this region's nucleotide sequence