Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4683

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13050 and 13051 are separated by 381 nucleotides13051 and 13052 are separated by 507 nucleotides mRNA_4682: 13050 - HMMPfam-Tim44-like domain-PF04280,SMART--SM00978,SUPERFAMILY--SSF54427, at 764,106 to 764,879 13050 mRNA_4683: 13051 - Hypothetical Protein, at 765,261 to 766,282 13051 mRNA_4684: 13052 - K12603 CNOT6, CCR4 CCR4-NOT transcription complex subunit 6, at 766,790 to 769,374 13052

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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765,054 + -1.0
765,350 - -0.1
765,373 + 13051 mRNA_4683 0.11 -0.4
766,339 - -1.6
766,344 + +0.7
766,345 + -0.9

Or see this region's nucleotide sequence