Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4790

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13157 and 13158 are separated by 737 nucleotides mRNA_4789: 13157 - K18402 PHF20 PHD finger protein 20, at 1,016,383 to 1,018,943 13157 mRNA_4790: 13158 - Hypothetical Protein, at 1,019,681 to 1,020,226 13158

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,019,310 - -0.1
1,019,313 - +0.6
1,019,314 + -1.5
1,019,316 + +0.2
1,019,327 + +0.3
1,019,363 + -2.1
1,019,452 - -2.1
1,019,596 - -0.6
1,019,604 + -0.3
1,019,607 - -0.7
1,019,634 + +0.5
1,019,763 + 13158 mRNA_4790 0.15 -1.5
1,019,766 - 13158 mRNA_4790 0.16 -0.4
1,019,972 + 13158 mRNA_4790 0.53 -1.6
1,020,320 + -0.2
1,020,453 - +0.1
1,020,484 + -0.7
1,020,628 + +0.7
1,020,742 + -2.4

Or see this region's nucleotide sequence