Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4793

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13161 and 13162 are separated by 352 nucleotides mRNA_4793: 13161 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 1,025,868 to 1,027,318 13161 mRNA_4794: 13162 - Hypothetical Protein, at 1,027,671 to 1,028,225 13162

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,025,119 - -2.1
1,025,587 - -0.7
1,025,587 - -0.7
1,025,595 - -1.3
1,025,598 - +0.5
1,025,604 + -2.1
1,025,605 + +2.3
1,025,606 - -0.2
1,025,607 + -0.6
1,025,633 - -0.2
1,025,728 + -0.4
1,025,741 + -0.4
1,025,744 + -0.4
1,025,755 + -0.1
1,025,782 - -0.9
1,025,888 + -2.3
1,025,901 + +0.9
1,026,040 - 13161 mRNA_4793 0.12 -2.6
1,026,047 - 13161 mRNA_4793 0.12 +0.2
1,026,050 + 13161 mRNA_4793 0.13 -1.8
1,026,056 - 13161 mRNA_4793 0.13 +0.4
1,026,065 - 13161 mRNA_4793 0.14 +0.4
1,026,210 + 13161 mRNA_4793 0.24 -0.3
1,026,783 + 13161 mRNA_4793 0.63 +1.6
1,026,794 + 13161 mRNA_4793 0.64 -0.8
1,026,934 - 13161 mRNA_4793 0.73 +0.2
1,026,937 + 13161 mRNA_4793 0.74 -0.0
1,027,018 + 13161 mRNA_4793 0.79 -1.8
1,027,573 - -0.2
1,027,796 + 13162 mRNA_4794 0.23 -1.2
1,028,068 + 13162 mRNA_4794 0.72 -0.1
1,028,114 + 13162 mRNA_4794 0.80 -0.7

Or see this region's nucleotide sequence