Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4902

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13269 and 13270 are separated by 439 nucleotides13270 and 13271 are separated by 118 nucleotides13271 and 13272 are separated by 143 nucleotides mRNA_4901: 13269 - K03163 TOP1 DNA topoisomerase I, at 1,259,473 to 1,262,647 13269 mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,263,087 to 1,265,892 13270 mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1,266,011 to 1,266,275 13271 mRNA_4904: 13272 - K00367 narB ferredoxin-nitrate reductase, at 1,266,419 to 1,270,865 13272

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
1,262,221 - 13269 mRNA_4901 0.87 +0.7
1,262,683 + -0.7
1,262,744 - +0.9
1,262,835 - -2.2
1,262,849 - -0.6
1,262,850 + +0.3
1,262,968 - -3.5
1,262,980 + -0.9
1,262,981 + +1.1
1,262,983 - +0.1
1,262,986 + +0.6
1,262,993 - -0.0
1,263,021 - -0.5
1,263,036 + +0.2
1,263,170 - -1.7
1,263,297 - -0.4
1,263,333 + +0.1
1,263,462 - 13270 mRNA_4902 0.13 -0.5
1,263,598 + 13270 mRNA_4902 0.18 -0.7
1,263,763 - 13270 mRNA_4902 0.24 -0.7
1,263,827 + 13270 mRNA_4902 0.26 +0.8
1,263,885 - 13270 mRNA_4902 0.28 +0.3
1,263,904 - 13270 mRNA_4902 0.29 +0.2
1,264,032 - 13270 mRNA_4902 0.34 -0.7
1,264,058 + 13270 mRNA_4902 0.35 -0.4
1,264,502 + 13270 mRNA_4902 0.50 -0.2
1,264,697 - 13270 mRNA_4902 0.57 +0.0
1,265,087 - 13270 mRNA_4902 0.71 -2.6
1,265,329 + 13270 mRNA_4902 0.80 -1.2
1,265,512 + 13270 mRNA_4902 0.86 +0.3
1,265,513 + 13270 mRNA_4902 0.86 -0.4
1,265,636 - -0.3
1,265,653 - -1.3
1,265,658 - -2.0
1,265,913 - +1.7
1,266,410 - +0.6
1,266,508 + +0.4
1,266,549 + +0.1
1,266,656 - -0.2
1,266,665 - +0.3
1,266,677 - +0.1

Or see this region's nucleotide sequence