Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4913

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13280 and 13281 are separated by 303 nucleotides13281 and 13282 are separated by 790 nucleotides mRNA_4912: 13280 - KOG3309 Ferredoxin, at 1,289,654 to 1,291,365 13280 mRNA_4913: 13281 - HMMPfam-Spermine/spermidine synthase-PF01564,ProSiteProfiles-Polyamine biosynthesis (PABS) domain profile.-PS51006,SUPERFAMILY--SSF53335, at 1,291,669 to 1,293,879 13281 mRNA_4914: 13282 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 1,294,670 to 1,297,098 13282

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,290,929 + 13280 mRNA_4912 0.74 -0.6
1,291,298 + -1.6
1,291,408 - -0.4
1,291,573 - +0.2
1,291,605 + -1.2
1,291,613 + +0.1
1,291,714 - -0.2
1,291,731 - +0.4
1,291,744 - -0.2
1,291,746 + +0.2
1,291,752 - -0.1
1,291,753 - -0.5
1,291,760 - -0.2
1,291,765 + -0.3
1,292,036 - 13281 mRNA_4913 0.17 +0.5
1,292,054 - 13281 mRNA_4913 0.17 -0.7
1,292,214 + 13281 mRNA_4913 0.25 -0.5
1,292,366 - 13281 mRNA_4913 0.32 -0.1
1,292,616 + 13281 mRNA_4913 0.43 -0.7
1,292,634 + 13281 mRNA_4913 0.44 -0.0
1,293,195 - 13281 mRNA_4913 0.69 -0.9
1,293,835 + -1.6
1,293,989 + +0.5
1,294,553 + +0.3

Or see this region's nucleotide sequence