Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4927

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13294 and 13295 are separated by 201 nucleotides13295 and 13296 are separated by 182 nucleotides mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558 13294 mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928 13295 mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226 13296

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
1,334,352 + +0.7
1,334,490 - -0.1
1,334,496 + +0.1
1,334,502 + -0.5
1,334,509 - -0.0
1,334,510 - -2.0
1,334,510 + -1.0
1,334,516 - -1.8
1,334,517 - -2.2
1,334,519 + +0.4
1,334,519 - -0.2
1,334,522 + -0.5
1,334,524 + -0.9
1,334,526 + -1.2
1,334,528 + +1.3
1,334,584 - +0.9
1,334,694 - +1.3
1,334,699 + +0.3
1,334,703 + -2.3
1,334,705 + -0.6
1,334,719 + -1.2
1,334,766 - -1.6
1,334,833 - -0.7
1,334,865 - -1.2
1,334,867 - +0.7
1,334,879 + -0.1
1,334,881 - +0.9
1,334,892 - +0.5
1,334,948 - -0.1
1,335,010 - 13295 mRNA_4927 0.12 +0.6
1,335,161 - 13295 mRNA_4927 0.18 -1.5
1,335,311 + 13295 mRNA_4927 0.25 +0.8
1,335,606 - 13295 mRNA_4927 0.39 +1.5
1,335,612 + 13295 mRNA_4927 0.39 -1.2
1,335,718 + 13295 mRNA_4927 0.44 +0.1
1,336,747 + -1.2
1,336,783 + -0.9
1,336,915 - -0.4
1,337,080 - +0.2
1,337,147 - -1.4
1,337,228 - -2.0
1,337,672 - 13296 mRNA_4928 0.18 +2.0
1,337,758 - 13296 mRNA_4928 0.21 -0.9
1,337,839 - 13296 mRNA_4928 0.23 -2.4

Or see this region's nucleotide sequence