Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4965

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13332 and 13333 are separated by 717 nucleotides13333 and 13334 are separated by 243 nucleotides mRNA_4964: 13332 - K08334 BECN1, VPS30, ATG6 beclin 1, at 1,419,421 to 1,420,996 13332 mRNA_4965: 13333 - K15156 MED14, RGR1 mediator of RNA polymerase II transcription subunit 14, at 1,421,714 to 1,425,387 13333 mRNA_4966: 13334 - Hypothetical Protein, at 1,425,631 to 1,426,865 13334

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
1,420,718 - 13332 mRNA_4964 0.82 -2.5
1,420,878 - -0.4
1,420,900 + -0.3
1,421,043 + +0.4
1,421,158 + -1.6
1,421,315 + -0.2
1,421,440 - -1.6
1,421,454 - -0.3
1,421,459 + +0.2
1,422,165 - 13333 mRNA_4965 0.12 -1.7
1,424,184 + 13333 mRNA_4965 0.67 -0.7
1,424,796 + 13333 mRNA_4965 0.84 +1.0
1,425,062 - +0.1
1,426,093 + 13334 mRNA_4966 0.37 +2.6

Or see this region's nucleotide sequence