Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5030

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13397 and 13398 are separated by 103 nucleotides13398 and 13399 are separated by 530 nucleotides mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1,591,057 to 1,592,630 13397 mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,592,734 to 1,594,516 13398 mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1,595,047 to 1,597,304 13399

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,591,783 - 13397 mRNA_5029 0.46 -0.6
1,591,797 - 13397 mRNA_5029 0.47 +0.8
1,591,802 + 13397 mRNA_5029 0.47 +0.4
1,591,803 - 13397 mRNA_5029 0.47 +0.8
1,591,811 + 13397 mRNA_5029 0.48 +0.8
1,591,931 - 13397 mRNA_5029 0.56 +0.7
1,591,954 + 13397 mRNA_5029 0.57 -0.8
1,592,064 - 13397 mRNA_5029 0.64 -2.0
1,592,080 - 13397 mRNA_5029 0.65 -2.5
1,592,086 - 13397 mRNA_5029 0.65 -0.9
1,592,098 + 13397 mRNA_5029 0.66 +0.1
1,592,099 + 13397 mRNA_5029 0.66 -1.0
1,592,104 + 13397 mRNA_5029 0.67 -1.7
1,592,110 - 13397 mRNA_5029 0.67 +0.9
1,592,113 - 13397 mRNA_5029 0.67 -2.2
1,592,114 - 13397 mRNA_5029 0.67 +0.3
1,592,122 - 13397 mRNA_5029 0.68 -1.2
1,592,234 - 13397 mRNA_5029 0.75 +1.6
1,592,236 - 13397 mRNA_5029 0.75 +0.4
1,592,253 + 13397 mRNA_5029 0.76 +1.6
1,592,253 - 13397 mRNA_5029 0.76 -0.3
1,592,259 - 13397 mRNA_5029 0.76 +0.6
1,592,259 - 13397 mRNA_5029 0.76 +0.0
1,592,261 - 13397 mRNA_5029 0.76 -0.0
1,592,262 + 13397 mRNA_5029 0.77 +0.3
1,592,392 - 13397 mRNA_5029 0.85 -1.7
1,592,393 + 13397 mRNA_5029 0.85 -0.2
1,592,401 + 13397 mRNA_5029 0.85 -0.1
1,592,407 + 13397 mRNA_5029 0.86 +0.3
1,592,409 - 13397 mRNA_5029 0.86 -0.2
1,592,410 - 13397 mRNA_5029 0.86 +0.1
1,592,410 - 13397 mRNA_5029 0.86 -0.0
1,592,412 - 13397 mRNA_5029 0.86 -1.7
1,592,556 - +0.3
1,592,557 - -0.7
1,592,566 - -1.3
1,592,578 - -0.1
1,592,680 - -0.9
1,592,695 - -0.2
1,592,697 + -0.3
1,592,709 - +2.0
1,592,716 - -0.6
1,592,718 - -1.3
1,592,727 + -0.8
1,592,732 + -0.7
1,594,633 - -1.1
1,594,637 - +0.5
1,594,643 + +1.1
1,594,647 - -1.0
1,594,648 - -1.2
1,594,653 + -2.2
1,594,653 + -0.4
1,594,654 + +1.5
1,594,660 + -0.4
1,594,661 - +2.0
1,594,662 - +0.9
1,594,672 - -0.1
1,594,799 - -2.1
1,594,816 + +0.5
1,594,826 + +0.1
1,594,937 - -2.8
1,594,942 + +0.4
1,594,945 + -0.5
1,595,091 + -1.6
1,595,100 - +0.6
1,595,111 + +1.4
1,595,417 - 13399 mRNA_5031 0.16 +0.9
1,595,512 - 13399 mRNA_5031 0.21 +0.1

Or see this region's nucleotide sequence