Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5082

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13449 and 13450 are separated by 706 nucleotides13450 and 13451 are separated by 610 nucleotides mRNA_5081: 13449 - K10396 KIF5 kinesin family member 5, at 1,701,702 to 1,705,465 13449 mRNA_5082: 13450 - K10696 BRE1 E3 ubiquitin-protein ligase BRE1, at 1,706,172 to 1,709,244 13450 mRNA_5083: 13451 - Hypothetical Protein, at 1,709,855 to 1,711,486 13451

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,705,373 + -0.2
1,705,512 - -1.4
1,705,646 - -2.7
1,705,653 + +1.7
1,705,656 - +1.1
1,705,795 + +0.8
1,705,807 + -0.4
1,705,811 - -0.1
1,705,812 - -0.5
1,706,081 - -0.5
1,706,085 + +0.5
1,706,235 - -1.0
1,706,383 + -0.4
1,707,351 - 13450 mRNA_5082 0.38 -0.4
1,708,360 + 13450 mRNA_5082 0.71 +0.2
1,708,596 + 13450 mRNA_5082 0.79 -0.6
1,709,031 + -1.3
1,709,178 + -1.8
1,709,306 + +0.5
1,709,327 - -0.7
1,709,443 - -0.0
1,709,458 - +0.9
1,709,469 - -1.0
1,709,475 + +0.6
1,709,476 + -0.7
1,709,476 + -1.3
1,709,483 + -0.3
1,709,493 + -0.7
1,709,606 - -0.5
1,709,608 - -0.3
1,709,609 - +0.6
1,709,615 + +0.5
1,709,756 - -0.2
1,709,901 - -1.3
1,709,924 + +0.7

Or see this region's nucleotide sequence