Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5158

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13525 and 13526 are separated by 965 nucleotides13526 and 13527 are separated by 822 nucleotides mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36,318 to 38,711 13525 mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39,677 to 40,567 13526 mRNA_5159: 13527 - Hypothetical Protein, at 41,390 to 42,543 13527

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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38,778 + -1.6
39,193 - +0.0
39,203 + -0.2
39,350 - -0.7
39,482 + -0.1
39,521 + +0.9
39,918 - 13526 mRNA_5158 0.27 -1.2
40,687 + -1.7
40,796 - +0.5
40,805 + -0.0
40,938 - -1.0
41,120 + -0.1
41,121 + -2.2
41,147 + +0.3
41,193 + -1.1
41,390 - +0.2
41,408 + -0.3

Or see this region's nucleotide sequence