Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5229

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13596 and 13597 are separated by 117 nucleotides mRNA_5228: 13596 - HMMPfam-Mis6-PF07778, at 203,109 to 206,278 13596 mRNA_5229: 13597 - SUPERFAMILY--SSF51445, at 206,396 to 208,003 13597

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
205,429 + 13596 mRNA_5228 0.73 -0.6
205,432 - 13596 mRNA_5228 0.73 -0.0
205,515 - 13596 mRNA_5228 0.76 -0.6
205,523 + 13596 mRNA_5228 0.76 -1.8
205,531 + 13596 mRNA_5228 0.76 +0.1
205,782 - 13596 mRNA_5228 0.84 -0.1
205,828 - 13596 mRNA_5228 0.86 -0.6
205,876 + 13596 mRNA_5228 0.87 -0.3
206,078 - -2.3
206,100 + +1.2
206,135 - -0.8
206,140 + -0.6
206,250 - +0.4
206,252 - +0.6
206,414 - +0.0
206,416 - -0.1
206,716 - 13597 mRNA_5229 0.20 +1.1
206,752 + 13597 mRNA_5229 0.22 -0.4
206,755 + 13597 mRNA_5229 0.22 +0.9
206,833 - 13597 mRNA_5229 0.27 +0.3
206,863 - 13597 mRNA_5229 0.29 -0.9
206,895 + 13597 mRNA_5229 0.31 -0.7
206,983 - 13597 mRNA_5229 0.37 -2.5
207,125 + 13597 mRNA_5229 0.45 -0.5
207,167 - 13597 mRNA_5229 0.48 +1.9
207,204 + 13597 mRNA_5229 0.50 +0.0
207,475 - 13597 mRNA_5229 0.67 +0.2
207,572 + 13597 mRNA_5229 0.73 -2.6
207,575 + 13597 mRNA_5229 0.73 +0.2
207,728 + 13597 mRNA_5229 0.83 +0.2
207,772 - 13597 mRNA_5229 0.86 +0.3
207,828 - 13597 mRNA_5229 0.89 -0.1
208,006 - -0.4
208,020 - -0.5
208,056 + -1.1
208,292 + +0.5
208,306 - +1.7
208,778 + +1.5
208,793 + +0.1
208,812 + -1.1
208,922 - -0.5
208,964 + -0.3

Or see this region's nucleotide sequence