Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5270

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13638 and 13639 are separated by 534 nucleotides mRNA_5270: 13638 - Hypothetical Protein, at 326,289 to 326,690 13638 mRNA_5271: 13639 - K11841 USP10, UBP3 ubiquitin carboxyl-terminal hydrolase 10, at 327,225 to 330,329 13639

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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325,359 + -0.4
325,477 - -0.4
325,479 - +0.1
325,490 - +0.5
325,506 + -1.6
325,543 + -0.3
325,768 + +0.1
326,340 + 13638 mRNA_5270 0.13 +1.3
326,342 - 13638 mRNA_5270 0.13 +0.2
326,345 - 13638 mRNA_5270 0.14 -0.3
326,481 + 13638 mRNA_5270 0.48 -0.5
326,644 + 13638 mRNA_5270 0.88 +0.6
326,646 - 13638 mRNA_5270 0.89 -0.3
326,656 - -1.2
326,657 + -2.7
326,660 + -0.2
326,688 - -1.1
326,694 + +0.3
326,708 + -0.5
326,713 - -1.6
326,724 + -0.1
326,732 - +0.6
326,803 + +0.2
326,806 + +0.2
326,838 + +0.8
326,878 + -0.6
326,884 + -0.2
326,885 + -0.2
327,010 - -0.0
327,011 - -2.4
327,065 + -0.2
327,111 - +0.1
327,420 - -0.5
327,443 + -1.1

Or see this region's nucleotide sequence