Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5495

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13862 and 13863 are separated by 270 nucleotides13863 and 13864 are separated by 455 nucleotides mRNA_5494: 13862 - KOG1119 Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain), at 228,031 to 229,041 13862 mRNA_5495: 13863 - K10733 GINS2, PSF2 GINS complex subunit 2, at 229,312 to 230,460 13863 mRNA_5496: 13864 - HMMPfam-HSF-type DNA-binding-PF00447,SUPERFAMILY--SSF46785, at 230,916 to 233,624 13864

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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229,084 + -0.6
229,096 + +0.4
230,540 - +1.2
230,559 - -0.4
230,707 + -4.3
230,712 - +0.2
230,986 - +1.2
231,139 + +0.5
231,150 - -0.8
231,159 - -0.3
231,283 - 13864 mRNA_5496 0.14 -0.4

Or see this region's nucleotide sequence