Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5508

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13876 and 13877 are separated by 456 nucleotides mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262,441 to 263,588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907 13877

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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261,517 - -0.4
261,525 + -1.5
261,546 + -0.0
261,564 + -1.5
261,653 - -0.7
261,828 - +0.1
262,128 - +1.2
262,548 + -0.4
262,710 - 13876 mRNA_5508 0.23 -0.3
262,723 + 13876 mRNA_5508 0.25 +0.9
262,806 + 13876 mRNA_5508 0.32 +1.4
262,895 - 13876 mRNA_5508 0.40 -0.3
263,365 - 13876 mRNA_5508 0.80 +0.1
263,445 - 13876 mRNA_5508 0.87 -0.6
263,578 - -2.1
263,579 + -1.9
263,582 - -0.9
263,689 - +0.9
263,708 - +0.5
263,718 - +0.2
263,727 - -0.1
263,732 + -1.7
263,732 + -1.6
263,736 - -0.1
263,749 + -0.1
263,844 + -1.8
263,878 + -0.2
264,436 - 13877 mRNA_5509 0.45 +0.7
264,473 + 13877 mRNA_5509 0.50 -2.5

Or see this region's nucleotide sequence