Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5517

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5517: 13885 - PRINTS-Proline rich extensin signature-PR01217, at 280,339 to 282,741 13885

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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279,435 - +0.6
279,550 + +0.5
279,552 - +0.4
279,562 + -2.4
279,565 + +0.4
279,589 + -0.0
279,710 - +0.8
279,711 + +0.7
279,716 - +0.3
279,726 + -1.2
279,747 + +0.7
279,846 + +0.7
279,864 + -2.7
279,866 - +0.8
279,874 + +0.8
279,883 + -0.6
279,902 + +0.6
280,009 - -0.5
280,050 + -1.9
280,053 - +1.3
280,092 + +1.4
280,135 + +1.0
280,173 + -1.2
280,186 + -2.3
280,451 - +0.9
280,457 + -1.3
280,625 - 13885 mRNA_5517 0.12 -0.0
280,918 + 13885 mRNA_5517 0.24 -2.5
281,056 + 13885 mRNA_5517 0.30 -0.4
281,223 + 13885 mRNA_5517 0.37 -0.2
281,403 + 13885 mRNA_5517 0.44 -1.6
281,474 - 13885 mRNA_5517 0.47 -0.1
281,813 + 13885 mRNA_5517 0.61 -0.1
281,817 - 13885 mRNA_5517 0.62 +1.0
281,915 + 13885 mRNA_5517 0.66 -2.6
281,918 - 13885 mRNA_5517 0.66 +1.1
282,084 - 13885 mRNA_5517 0.73 -3.6
282,441 + 13885 mRNA_5517 0.87 +0.0
282,669 - -1.1
282,949 + +0.1
283,108 - +0.1
283,138 + -0.3
283,404 - +0.2
283,426 - +0.1
283,532 - +1.2
283,544 - -0.4
283,571 + +0.8

Or see this region's nucleotide sequence