Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5521

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13888 and 13889 are separated by 482 nucleotides13889 and 13890 are separated by 489 nucleotides mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290,297 to 291,417 13888 mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291,900 to 293,030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293,520 to 294,673 13890

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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291,103 - 13888 mRNA_5520 0.72 +0.2
291,105 + 13888 mRNA_5520 0.72 -1.0
291,151 - 13888 mRNA_5520 0.76 -0.4
291,153 - 13888 mRNA_5520 0.76 -2.2
291,392 - +0.7
291,473 + +1.3
291,540 + +1.2
291,568 + -2.1
291,675 - -1.6
291,856 - +0.1
291,857 + -0.3
291,862 + -2.9
291,891 - +0.4
292,011 - +0.5
292,012 + +0.1
292,015 - 13889 mRNA_5521 0.10 +0.1
292,019 + 13889 mRNA_5521 0.11 +0.2
292,021 + 13889 mRNA_5521 0.11 -0.8
292,021 + 13889 mRNA_5521 0.11 -1.0
292,173 - 13889 mRNA_5521 0.24 +1.3
292,173 - 13889 mRNA_5521 0.24 -2.1
292,188 - 13889 mRNA_5521 0.25 +0.5
292,192 + 13889 mRNA_5521 0.26 -0.6
292,324 - 13889 mRNA_5521 0.37 +0.7
292,590 + 13889 mRNA_5521 0.61 +0.9
292,592 - 13889 mRNA_5521 0.61 -0.7
292,629 - 13889 mRNA_5521 0.64 -2.1
292,647 + 13889 mRNA_5521 0.66 +0.6
292,702 + 13889 mRNA_5521 0.71 -0.2
292,708 - 13889 mRNA_5521 0.71 -0.9
292,756 - 13889 mRNA_5521 0.76 +0.3
292,767 + 13889 mRNA_5521 0.77 -0.3
292,898 + 13889 mRNA_5521 0.88 -2.5
292,924 - -0.2
292,935 + -0.8
293,058 + +0.8
293,100 + -0.3
293,190 - +1.0
293,201 + -1.0
293,216 - +0.5
293,222 - +0.1
293,390 + +0.6
293,444 - -1.7
293,507 - +0.0
293,908 + 13890 mRNA_5522 0.34 -1.8
293,911 + 13890 mRNA_5522 0.34 -0.6
294,001 - 13890 mRNA_5522 0.42 -0.7

Or see this region's nucleotide sequence