Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5527

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13894 and 13895 are separated by 420 nucleotides13895 and 13896 are separated by 279 nucleotides mRNA_5526: 13894 - K00052 leuB 3-isopropylmalate dehydrogenase, at 301,709 to 303,276 13894 mRNA_5527: 13895 - K11883 NOB1 RNA-binding protein NOB1, at 303,697 to 305,493 13895 mRNA_5528: 13896 - HMMPfam-Protein of unknown function (DUF2416)-PF10315, at 305,773 to 306,425 13896

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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303,325 - -0.6
303,349 - -0.3
303,354 + +0.2
303,378 - -1.3
303,378 - -1.2
303,378 - +0.7
303,381 + -0.9
303,383 - -0.6
303,386 + +1.1
303,387 + -1.7
303,547 + -1.4
305,508 - -0.9
305,542 - +0.4
305,722 - -2.5
305,837 - +0.2
306,006 - 13896 mRNA_5528 0.36 -1.0
306,125 - 13896 mRNA_5528 0.54 -1.9
306,134 - 13896 mRNA_5528 0.55 -0.9
306,170 + 13896 mRNA_5528 0.61 -0.4
306,292 - 13896 mRNA_5528 0.79 +0.9
306,315 + 13896 mRNA_5528 0.83 -0.7
306,341 - 13896 mRNA_5528 0.87 -0.2
306,432 - -0.1
306,440 + -0.3
306,446 - -1.6
306,452 - -0.8

Or see this region's nucleotide sequence