Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5573

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13940 and 13941 are separated by 367 nucleotides mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405,680 to 409,565 13940 mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409,933 to 411,114 13941

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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409,527 + -0.5
409,575 - -0.9
409,590 + -0.5
409,598 - +0.3
409,614 + -0.3
409,614 + -0.9
409,617 - +0.8
409,624 + +0.3
409,670 - +0.2
409,696 - -0.8
409,717 - +0.0
409,730 + -0.1
409,755 - +0.2
409,834 - -0.3
409,863 - -1.3
409,939 + +0.5
410,023 + -1.9
410,040 + +0.7
410,115 + 13941 mRNA_5573 0.15 -0.7
410,306 + 13941 mRNA_5573 0.32 +0.1
410,323 + 13941 mRNA_5573 0.33 +1.4
410,562 + 13941 mRNA_5573 0.53 -3.0
410,580 + 13941 mRNA_5573 0.55 -0.2
410,769 + 13941 mRNA_5573 0.71 -1.4
410,799 + 13941 mRNA_5573 0.73 -0.0
410,808 + 13941 mRNA_5573 0.74 +0.6
410,828 - 13941 mRNA_5573 0.76 +0.7
410,852 - 13941 mRNA_5573 0.78 +0.3
410,865 + 13941 mRNA_5573 0.79 -0.2
410,988 + 13941 mRNA_5573 0.89 -1.1
411,001 - +0.4
411,007 + -1.0
411,010 + -0.5
411,036 + -0.7
411,059 - +0.5
411,130 - -2.9
411,136 + +1.2
411,149 - +0.3
411,173 - -0.5
411,180 + -0.4
411,185 + -1.9
411,198 + -0.2
411,198 + -0.0
411,220 - -1.5
411,264 - -0.4
411,269 + -0.9
411,271 + +2.7
411,282 + +0.0
411,288 - +0.5
411,293 + -0.7
411,296 - -0.1
411,307 + +0.7
411,310 - +0.2
411,311 - +0.9
411,312 + +0.5
411,315 + -2.3
411,316 - +0.3
411,317 + -2.2
411,317 + -0.5
411,318 + +0.5
411,319 - +0.1
411,319 + +0.7
411,322 - -0.3
411,328 - +0.0
411,337 - -0.1
411,337 + +0.0
411,338 + -0.1
411,345 - -2.7
411,364 - -0.6
411,368 - -2.1
411,374 - -1.4
411,383 - -1.0
411,388 - -0.3
411,395 + -0.4
411,412 + +0.1
411,416 + -2.3
411,424 - +1.3
411,427 - -1.1
411,433 + -1.3
411,438 - -0.6
411,449 - -0.1
411,453 + -2.1
411,455 - -2.4
411,458 - -2.4
411,465 - -0.6
411,466 - -1.7
411,475 + +0.7
411,482 + +0.7
411,489 - +0.2
411,496 - +0.3
411,503 + -0.6
411,504 - -0.8
411,524 - -3.1
411,531 + -0.6
411,541 - -0.3
411,555 - +0.6
411,569 + -0.1
411,570 - -0.3
411,588 - -0.7
411,600 - +0.7
411,619 + +1.2
411,621 - -0.8
411,646 - -0.4
411,651 - -1.5
411,652 - -1.3
411,652 - +0.1
411,657 + +0.1
411,659 + -0.0
411,659 - -3.7
411,661 - +0.1
411,662 - -0.7
411,663 - +0.2
411,663 - +0.6
411,663 + +0.3
411,666 + -1.2
411,672 + -0.4
411,679 + +0.3
411,683 - +1.2
411,684 + +0.3
411,685 + -0.8
411,685 + -0.2
411,685 - -0.3
411,687 - -0.5
411,690 + +0.1
411,692 + +0.1
411,693 + +0.1
411,697 - -0.8
411,702 + +0.7
411,702 - -0.7
411,703 + -0.5
411,707 + -0.3
411,707 + -0.1
411,711 + -0.7
411,715 + -2.0
411,716 + -0.8
411,723 + +0.3
411,727 - +0.8
411,727 + -0.8
411,729 - +0.2
411,742 - -0.3
411,746 - -0.4
411,751 - +0.7
411,754 - -4.1
411,755 + -1.3
411,756 + -0.0
411,761 + -0.4
411,765 - -1.1
411,773 - +0.2
411,774 + -0.8
411,774 + +0.0
411,775 + -0.3
411,775 + -2.4
411,776 + -0.5
411,776 - -0.3
411,781 - -0.6
411,784 + -1.9
411,785 - -0.1
411,788 - +0.4
411,789 - -0.8
411,795 + -0.9
411,795 - +0.8
411,799 + +0.1
411,799 + +0.2
411,801 - -0.5
411,802 - -1.3
411,802 - +0.9
411,815 - -0.2
411,822 - -1.7
411,826 + -0.4
411,831 + -0.9
411,876 + -2.2
411,932 - -0.2
411,948 - +0.7
411,955 + -1.3
411,959 - -2.5
411,959 + -0.4
411,979 + +1.1
411,980 + -0.4
411,985 - +0.2
411,987 + +0.2
411,989 + +0.5
412,064 + -3.1
412,097 + +1.0
412,097 - -0.4

Or see this region's nucleotide sequence