Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5578

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13945 and 13946 are separated by 396 nucleotides mRNA_5577: 13945 - Hypothetical Protein, at 418,154 to 419,235 13945 mRNA_5578: 13946 - HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095, at 419,632 to 421,061 13946

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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418,835 - 13945 mRNA_5577 0.63 +1.1
418,836 - 13945 mRNA_5577 0.63 +0.7
418,967 - 13945 mRNA_5577 0.75 -3.3
419,001 - 13945 mRNA_5577 0.78 -0.7
419,140 - -0.2
419,140 - -0.3
419,258 - +0.0
419,273 + +1.2
419,404 - +0.3
419,415 + -0.5
419,416 + -2.4
419,420 - -0.8
419,435 + -0.4
419,437 + -2.3
419,449 - +1.0
419,519 - -0.5
419,542 - -0.7
419,542 - -0.7
419,548 - -0.7
419,549 + +0.2
419,550 + +0.9
419,555 - +0.8
419,558 + -1.1
419,558 + -0.7
419,559 - -0.9
419,561 + +1.0
419,565 + +1.6
419,568 + -1.8
419,568 + +0.7
419,570 - +0.0
419,571 - -1.2
419,572 - -0.4
419,572 + +0.2
419,575 - +0.8
419,581 + -2.0
419,588 + +0.0
419,590 + -0.1
419,590 - -0.7
419,591 + +0.6
419,595 + -0.3
419,596 + +2.1
419,605 + -0.8
421,206 - -0.3
421,329 + -0.0
421,353 - -4.6
421,468 - -0.2
421,473 + -0.9
421,483 - -0.0
421,484 - +0.5
421,486 - -2.1
421,489 - +0.0
421,489 + +0.9
421,503 + +0.1
421,508 + -0.4
421,523 - -1.7
421,525 - +1.1
421,530 + -0.6
421,530 + -0.1
421,636 + +2.1
421,663 - -0.1
421,822 - -0.2
421,826 + +0.5
421,834 + -1.5
421,845 + -0.5

Or see this region's nucleotide sequence