Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5579

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13947 and 13948 are separated by 791 nucleotides mRNA_5579: 13947 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 422,272 to 423,518 13947 mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424,310 to 425,729 13948

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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421,329 + -0.0
421,353 - -4.6
421,468 - -0.2
421,473 + -0.9
421,483 - -0.0
421,484 - +0.5
421,486 - -2.1
421,489 - +0.0
421,489 + +0.9
421,503 + +0.1
421,508 + -0.4
421,523 - -1.7
421,525 - +1.1
421,530 + -0.6
421,530 + -0.1
421,636 + +2.1
421,663 - -0.1
421,822 - -0.2
421,826 + +0.5
421,834 + -1.5
421,845 + -0.5
422,146 + +0.4
422,525 - 13947 mRNA_5579 0.20 +0.0
422,606 + 13947 mRNA_5579 0.27 +0.1
422,825 - 13947 mRNA_5579 0.44 -0.3
422,870 + 13947 mRNA_5579 0.48 -0.1
422,994 - 13947 mRNA_5579 0.58 -1.0
423,020 + 13947 mRNA_5579 0.60 -0.5
423,152 + 13947 mRNA_5579 0.71 -1.5
423,433 + +1.5
423,433 + -0.4
423,474 - -2.2
423,475 - +0.3
423,634 + -1.8
423,741 - -1.5
423,761 + -2.3
423,761 + +0.8
423,771 + -0.3

Or see this region's nucleotide sequence