Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5605

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13972 and 13973 are separated by 411 nucleotides13973 and 13974 are separated by 159 nucleotides mRNA_5604: 13972 - Hypothetical Protein, at 487,257 to 489,515 13972 mRNA_5605: 13973 - Hypothetical Protein, at 489,927 to 490,531 13973 mRNA_5606: 13974 - HMMPfam-Glycosyl hydrolase family 61-PF03443, at 490,691 to 492,139 13974

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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489,484 - -0.7
489,814 + +0.5
489,951 + +0.1
490,908 + 13974 mRNA_5606 0.15 +0.8

Or see this region's nucleotide sequence