Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5611

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13978 and 13979 are separated by 266 nucleotides13979 and 13980 are separated by 149 nucleotides mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396 13978 mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507,663 to 510,497 13979 mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510,647 to 512,391 13980

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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506,820 + 13978 mRNA_5610 0.79 -2.8
506,991 + 13978 mRNA_5610 0.85 -2.7
507,001 + 13978 mRNA_5610 0.85 +0.9
507,269 - -1.5
507,284 - +0.9
507,292 + +0.5
507,378 + -1.2
507,570 - -0.0
507,594 + -0.9
507,611 - +1.8
508,178 - 13979 mRNA_5611 0.18 +2.2
510,099 + 13979 mRNA_5611 0.86 +0.2
510,378 - +0.4
510,716 - -0.1
511,012 - 13980 mRNA_5612 0.21 +1.0
511,029 - 13980 mRNA_5612 0.22 +0.0
511,464 - 13980 mRNA_5612 0.47 +1.7

Or see this region's nucleotide sequence