Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5668

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14035 and 14036 are separated by 193 nucleotides14036 and 14037 are separated by 360 nucleotides mRNA_5667: 14035 - K11233 SSK1 osomolarity two-component system, response regulator SSK1, at 642,793 to 648,199 14035 mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648,393 to 650,754 14036 mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651,115 to 652,658 14037

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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647,500 + 14035 mRNA_5667 0.87 -3.6
647,524 + 14035 mRNA_5667 0.87 -0.2
647,639 + 14035 mRNA_5667 0.90 -0.2
647,807 + +1.5
648,379 + -1.6
648,742 + 14036 mRNA_5668 0.15 -0.7
648,868 + 14036 mRNA_5668 0.20 +0.7
649,135 + 14036 mRNA_5668 0.31 -0.8
649,147 - 14036 mRNA_5668 0.32 -0.7
649,534 - 14036 mRNA_5668 0.48 -1.2
649,755 - 14036 mRNA_5668 0.58 -3.1
649,898 + 14036 mRNA_5668 0.64 -1.4
650,020 + 14036 mRNA_5668 0.69 +0.5
650,020 + 14036 mRNA_5668 0.69 -0.5
650,036 - 14036 mRNA_5668 0.70 -0.2
650,215 - 14036 mRNA_5668 0.77 +0.1
650,219 + 14036 mRNA_5668 0.77 -1.1
650,248 + 14036 mRNA_5668 0.79 -1.6
650,479 - 14036 mRNA_5668 0.88 -0.5
650,639 - -2.6
650,640 + +0.6
650,645 + -0.5
650,787 - +0.2

Or see this region's nucleotide sequence