Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5677

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14044 and 14045 are separated by 149 nucleotides14045 and 14046 are separated by 547 nucleotides mRNA_5676: 14044 - BLAST putative protein 27 [Rhizopogon vesiculosus], at 670,458 to 672,345 14044 mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672,495 to 673,304 14045 mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673,852 to 675,422 14046

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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672,163 + -0.1
672,184 + -0.6
672,452 + +0.6
672,470 - +0.1
672,497 + +0.0
672,594 - 14045 mRNA_5677 0.12 +2.0
672,594 - 14045 mRNA_5677 0.12 -1.7
672,631 + 14045 mRNA_5677 0.17 +0.5
672,735 - 14045 mRNA_5677 0.30 -0.3
672,751 - 14045 mRNA_5677 0.32 -1.9
672,887 + 14045 mRNA_5677 0.48 -1.5
672,891 - 14045 mRNA_5677 0.49 -0.8
672,896 + 14045 mRNA_5677 0.50 -1.0
672,903 - 14045 mRNA_5677 0.50 -0.7
672,910 + 14045 mRNA_5677 0.51 +0.1
673,040 + 14045 mRNA_5677 0.67 -0.4
673,049 - 14045 mRNA_5677 0.68 -1.1
673,050 + 14045 mRNA_5677 0.69 -0.5
673,051 - 14045 mRNA_5677 0.69 -2.1
673,072 - 14045 mRNA_5677 0.71 -2.9
673,347 + -0.2
673,458 - +1.0
673,493 + +0.7
673,628 - +0.5
673,631 - +0.1
673,645 + +0.2
673,651 - -0.1
673,657 - +1.3
673,661 + -0.6
673,662 + -0.7
673,670 + +0.1
673,673 - -1.2
673,678 + +0.6
673,680 - -0.6
673,680 + -2.1
673,680 - -0.4
673,684 + +1.0
673,703 - -1.5
673,707 + -0.1
673,709 + +0.1
673,710 + -0.9
673,721 + +0.2
673,740 - +0.4
673,796 - +1.3
673,797 + -0.0
673,798 + -0.1
673,831 + +0.0
673,861 - +0.4
673,890 + -2.9
673,911 + -2.6
673,911 + +0.3
674,048 + 14046 mRNA_5678 0.12 +0.6
674,221 - 14046 mRNA_5678 0.23 -2.4

Or see this region's nucleotide sequence