Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5745

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14112 and 14113 are separated by 822 nucleotides mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834,713 to 839,482 14112 mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840,305 to 845,790 14113

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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839,637 - -0.0
839,640 - -0.3
839,807 - -0.8
839,809 - -1.1
839,813 + -0.8
839,822 + -1.9
839,822 + -0.0
839,825 + -2.3
839,828 + +0.1
839,840 + -1.8
839,842 + +0.5
839,842 + -1.3
839,843 - -0.2
839,848 + +1.6
839,852 + -1.2
839,852 + -1.5
839,853 - +0.1
839,988 - -2.0
839,998 + -0.7
840,000 - -0.9
840,011 - -1.2
840,125 - +0.8
840,142 - -0.9
840,144 - -0.8
840,148 + -0.8
840,150 + -0.8
840,300 + -1.4
840,318 + +0.5
841,610 + 14113 mRNA_5745 0.24 +0.2
842,016 - 14113 mRNA_5745 0.31 +0.5
842,043 + 14113 mRNA_5745 0.32 -0.6
843,148 + 14113 mRNA_5745 0.52 -0.9
844,098 + 14113 mRNA_5745 0.69 -0.4
844,571 - 14113 mRNA_5745 0.78 -2.0
844,750 + 14113 mRNA_5745 0.81 -1.4
845,124 - 14113 mRNA_5745 0.88 +1.0
846,024 - -0.2
846,051 + -0.8
846,072 - +0.7
846,074 + +0.7
846,157 - +0.4
846,169 - -0.6
846,196 + +0.3
846,200 + -2.4
846,200 - +0.7
846,215 + +0.1
846,255 + -1.9
846,287 + -0.3
846,306 - -0.6
846,330 + +1.1
846,490 - -0.6
846,503 + +0.1
846,641 + +0.4
846,777 + -0.2
846,777 + +0.9
846,777 - -0.4

Or see this region's nucleotide sequence