Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5791

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14158 and 14159 are separated by 552 nucleotides14159 and 14160 are separated by 256 nucleotides mRNA_5790: 14158 - K01054 MGLL acylglycerol lipase, at 945,926 to 947,446 14158 mRNA_5791: 14159 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 947,999 to 949,301 14159 mRNA_5792: 14160 - K10755 RFC2_4 replication factor C subunit 2/4, at 949,558 to 951,302 14160

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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947,081 - 14158 mRNA_5790 0.76 +0.3
947,087 + 14158 mRNA_5790 0.76 -0.4
947,097 + 14158 mRNA_5790 0.77 -0.6
947,183 + 14158 mRNA_5790 0.83 +1.9
947,208 + 14158 mRNA_5790 0.84 -0.5
947,321 + -0.4
947,468 - -0.0
947,468 - -1.0
947,469 - +0.3
947,483 + -1.1
947,485 + -0.3
947,485 - +1.6
947,609 - -0.8
947,611 - +0.7
947,622 + -0.3
947,773 + +0.2
947,921 - +0.3
947,950 - -0.8
948,747 - 14159 mRNA_5791 0.57 -0.2
949,327 + +0.6
949,493 - -2.5

Or see this region's nucleotide sequence