Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5800

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14167 and 14168 are separated by 334 nucleotides14168 and 14169 are separated by 265 nucleotides mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967,190 to 969,688 14167 mRNA_5800: 14168 - K11801 WDR23 WD repeat-containing protein 23, at 970,023 to 972,593 14168 mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972,859 to 974,663 14169

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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969,706 - -1.6
969,718 + -1.1
969,735 + -1.0
969,819 + -0.1
969,867 - -1.4
969,883 + +0.3
969,906 + -0.8
969,933 - +0.2
969,972 - +0.2
969,974 + +0.7
970,184 + +0.1
970,225 + +0.3
970,328 + 14168 mRNA_5800 0.12 -0.6
970,337 - 14168 mRNA_5800 0.12 -0.6
970,337 - 14168 mRNA_5800 0.12 -0.5
970,450 - 14168 mRNA_5800 0.17 -0.9
970,450 + 14168 mRNA_5800 0.17 +0.2
970,611 + 14168 mRNA_5800 0.23 -0.6
971,023 + 14168 mRNA_5800 0.39 -1.9
971,052 + 14168 mRNA_5800 0.40 -0.7
971,178 + 14168 mRNA_5800 0.45 -1.9
971,312 - 14168 mRNA_5800 0.50 -0.1
971,592 + 14168 mRNA_5800 0.61 +0.6
971,613 - 14168 mRNA_5800 0.62 +0.5
971,775 - 14168 mRNA_5800 0.68 -1.0
972,037 - 14168 mRNA_5800 0.78 +0.2
972,198 + 14168 mRNA_5800 0.85 -3.6
972,210 + 14168 mRNA_5800 0.85 -0.9
972,305 - 14168 mRNA_5800 0.89 -0.9
972,321 - 14168 mRNA_5800 0.89 +0.2
972,357 + +0.7
972,483 - -0.3
972,490 + -0.4
972,512 + +1.3
972,563 - -0.4
972,625 + -0.4
972,630 + +0.0
972,638 + +0.6
972,648 - +0.8
972,652 + -1.3
972,778 - +0.3
972,798 - +0.7
972,799 + +0.2
972,810 + -1.1
972,929 - -1.0
972,932 - +1.4
973,101 - 14169 mRNA_5801 0.13 -0.6
973,104 + 14169 mRNA_5801 0.14 +0.4
973,123 + 14169 mRNA_5801 0.15 +0.7
973,222 - 14169 mRNA_5801 0.20 -1.7
973,224 - 14169 mRNA_5801 0.20 +0.2
973,232 + 14169 mRNA_5801 0.21 +0.3
973,243 + 14169 mRNA_5801 0.21 -0.5
973,402 + 14169 mRNA_5801 0.30 -0.7
973,501 + 14169 mRNA_5801 0.36 +2.2

Or see this region's nucleotide sequence