Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5804

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14171 and 14172 are separated by 635 nucleotides14172 and 14173 are separated by 192 nucleotides mRNA_5803: 14171 - Hypothetical Protein, at 976,295 to 977,367 14171 mRNA_5804: 14172 - Hypothetical Protein, at 978,003 to 978,815 14172 mRNA_5805: 14173 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 979,008 to 980,217 14173

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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977,226 + 14171 mRNA_5803 0.87 -2.4
977,297 - -0.3
977,395 + -1.0
977,434 - +0.2
978,141 + 14172 mRNA_5804 0.17 -0.1
978,609 - 14172 mRNA_5804 0.75 +0.7
979,464 + 14173 mRNA_5805 0.38 -1.9
979,655 - 14173 mRNA_5805 0.53 +1.8
979,728 + 14173 mRNA_5805 0.60 -0.3
979,740 + 14173 mRNA_5805 0.60 -1.1

Or see this region's nucleotide sequence