Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5806

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14173 and 14174 are separated by 751 nucleotides14174 and 14175 are separated by 555 nucleotides mRNA_5805: 14173 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 979,008 to 980,217 14173 mRNA_5806: 14174 - KOG4197 FOG PPR repeat, at 980,969 to 985,772 14174 mRNA_5807: 14175 - HMMPfam-Protein of unknown function (DUF2638)-PF10937, at 986,328 to 987,350 14175

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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980,025 - 14173 mRNA_5805 0.84 -0.8
980,274 - -0.7
980,277 - -1.0
980,312 + -1.7
980,312 + +1.5
980,326 - -0.7
980,334 - +0.3
980,457 - -0.6
980,743 + -0.1
980,946 + -2.2
981,814 + 14174 mRNA_5806 0.18 -0.5
982,114 + 14174 mRNA_5806 0.24 -0.5
982,410 - 14174 mRNA_5806 0.30 +0.9
982,850 + 14174 mRNA_5806 0.39 -0.3
985,896 + -0.6
985,987 - +0.0
986,003 + +0.2
986,106 - -0.6
986,121 + -0.2
986,125 - -1.5
986,125 - -0.5
986,126 - -1.3
986,131 + -0.2
986,131 - +1.8
986,138 + +0.3
986,144 - -0.2
986,144 - -0.1
986,150 - -0.2
986,154 + -0.4
986,158 + -0.1
986,161 - -0.5
986,161 + -0.1
986,261 + +1.1
986,267 - -0.1
986,270 + +0.7
986,271 - -1.4
986,271 + +0.7
986,272 - -1.3
986,275 - -1.7
986,295 + -1.6
986,296 - -2.8
986,300 + +0.0
986,301 + +0.1
986,456 + 14175 mRNA_5807 0.13 -0.0

Or see this region's nucleotide sequence