Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5817

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14184 and 14185 are separated by 173 nucleotides14185 and 14186 are separated by 636 nucleotides mRNA_5816: 14184 - KOG1437 Fasciclin and related adhesion glycoproteins, at 1,009,642 to 1,012,931 14184 mRNA_5817: 14185 - K09680 coaW type II pantothenate kinase, at 1,013,105 to 1,015,263 14185 mRNA_5818: 14186 - K14857 SPB1, FTSJ3 AdoMet-dependent rRNA methyltransferase SPB1, at 1,015,900 to 1,019,364 14186

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,012,205 - 14184 mRNA_5816 0.78 -0.7
1,012,630 - +0.3
1,012,787 - +0.6
1,013,118 - -0.1
1,014,284 - 14185 mRNA_5817 0.55 +0.1
1,015,300 + -0.7
1,015,313 - -1.8
1,015,314 + -1.0
1,015,329 + +0.1
1,015,434 - -0.4
1,015,457 + +0.6
1,015,458 + -0.1
1,015,478 + +0.9
1,015,483 - -1.9
1,015,592 + -0.9
1,015,602 - -1.2
1,015,608 - +0.5
1,015,608 - -1.0
1,015,608 + -1.0
1,015,608 + -0.6
1,015,609 - +1.8
1,015,611 - -0.5
1,015,612 - -0.5
1,015,624 + +0.5
1,015,627 - +0.3
1,015,628 + -1.5
1,015,630 + +0.3
1,015,631 - -1.5
1,015,635 - +0.7
1,015,639 + -0.2
1,015,641 + -0.7
1,015,646 + -1.7
1,015,741 - -0.5
1,015,755 + +0.3
1,015,771 - -0.5
1,015,775 - -1.4
1,015,779 + -0.9
1,015,780 - -1.3
1,015,789 + -1.0

Or see this region's nucleotide sequence