Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6061

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14428 and 14429 are separated by 309 nucleotides14429 and 14430 are separated by 525 nucleotides mRNA_6060: 14428 - K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7, at 1,545,467 to 1,548,419 14428 mRNA_6061: 14429 - KOG3772 M-phase inducer phosphatase, at 1,548,729 to 1,549,422 14429 mRNA_6062: 14430 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 1,549,948 to 1,551,724 14430

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,548,344 - -0.6
1,548,492 - -1.9
1,548,501 - -0.2
1,548,515 - -0.9
1,548,515 - -2.9
1,548,520 + -2.3
1,548,527 + +0.8
1,548,553 + -0.4
1,548,577 + +0.0
1,548,675 - -0.1
1,548,690 + +0.5
1,548,709 + +0.9
1,548,833 + 14429 mRNA_6061 0.15 +0.1
1,548,880 + 14429 mRNA_6061 0.22 +0.0
1,549,021 + 14429 mRNA_6061 0.42 +0.0
1,549,245 + 14429 mRNA_6061 0.74 +2.5
1,549,546 + -2.3
1,549,707 + -0.3
1,549,711 + +0.0
1,549,888 - -2.0
1,549,892 - +0.9
1,550,044 - -3.2

Or see this region's nucleotide sequence