Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6069

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14436 and 14437 are separated by 220 nucleotides14437 and 14438 are separated by 163 nucleotides mRNA_6068: 14436 - K01855 PUS3, DEG1 tRNA pseudouridine38/39 synthase, at 1,565,230 to 1,567,371 14436 mRNA_6069: 14437 - KOG0198 MEKK and related serine/threonine protein kinases, at 1,567,592 to 1,572,715 14437 mRNA_6070: 14438 - K14552 NAN1, UTP17, WDR75 NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17), at 1,572,879 to 1,575,986 14438

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,566,776 + 14436 mRNA_6068 0.72 -0.1
1,567,266 - -1.4
1,567,438 - +0.9
1,567,752 - -1.2
1,567,864 - +0.4
1,567,960 + -2.7
1,568,030 + +0.2
1,568,120 - 14437 mRNA_6069 0.10 -2.6
1,568,150 - 14437 mRNA_6069 0.11 -1.8
1,568,332 + 14437 mRNA_6069 0.14 +0.7
1,568,451 + 14437 mRNA_6069 0.17 +0.9
1,568,570 + 14437 mRNA_6069 0.19 -0.0
1,568,575 - 14437 mRNA_6069 0.19 +0.1
1,568,940 - 14437 mRNA_6069 0.26 -0.8
1,569,031 - 14437 mRNA_6069 0.28 -1.1
1,569,157 - 14437 mRNA_6069 0.31 -0.3
1,569,319 - 14437 mRNA_6069 0.34 -2.8
1,569,721 + 14437 mRNA_6069 0.42 -0.9
1,569,737 - 14437 mRNA_6069 0.42 +1.1
1,570,200 + 14437 mRNA_6069 0.51 +0.9
1,570,448 - 14437 mRNA_6069 0.56 -1.3
1,570,573 + 14437 mRNA_6069 0.58 -0.8
1,570,625 - 14437 mRNA_6069 0.59 +0.0
1,570,647 - 14437 mRNA_6069 0.60 -1.4
1,570,776 - 14437 mRNA_6069 0.62 +0.4
1,570,779 - 14437 mRNA_6069 0.62 -0.2
1,570,884 - 14437 mRNA_6069 0.64 +0.0
1,571,340 + 14437 mRNA_6069 0.73 +0.0
1,572,362 + -0.6
1,572,421 - -0.9
1,572,491 + +0.0
1,572,505 + +0.2
1,572,508 + -2.3
1,572,623 - -0.6
1,572,623 - -0.3
1,572,634 - -1.3
1,572,798 - -0.1
1,572,823 - -2.1
1,572,831 - -0.5

Or see this region's nucleotide sequence