Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6111

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14478 and 14479 are separated by 291 nucleotides14479 and 14480 are separated by 84 nucleotides mRNA_6110: 14478 - Hypothetical Protein, at 15,067 to 15,769 14478 mRNA_6111: 14479 - Hypothetical Protein, at 16,061 to 17,629 14479 mRNA_6112: 14480 - K01785 galM, GALM aldose 1-epimerase, at 17,714 to 19,844 14480

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
15,116 - +0.1
15,117 + -1.2
15,118 + -1.5
15,130 + +0.5
15,245 - 14478 mRNA_6110 0.25 -2.0
15,256 + 14478 mRNA_6110 0.27 -1.0
15,281 - 14478 mRNA_6110 0.30 +0.3
15,308 + 14478 mRNA_6110 0.34 -1.1
15,311 + 14478 mRNA_6110 0.35 -1.0
15,544 - 14478 mRNA_6110 0.68 -1.2
15,693 - 14478 mRNA_6110 0.89 +0.8
15,705 + -0.7
15,765 - +2.0
15,862 + -2.3
16,319 + 14479 mRNA_6111 0.16 -0.9
16,533 + 14479 mRNA_6111 0.30 -1.6
16,535 - 14479 mRNA_6111 0.30 -0.5
16,665 + 14479 mRNA_6111 0.38 -0.2
16,681 + 14479 mRNA_6111 0.40 -1.1
16,681 + 14479 mRNA_6111 0.40 -1.4
16,689 + 14479 mRNA_6111 0.40 -2.6
16,719 + 14479 mRNA_6111 0.42 -1.4
16,817 + 14479 mRNA_6111 0.48 -1.6
16,983 - 14479 mRNA_6111 0.59 -1.3
17,034 + 14479 mRNA_6111 0.62 -0.6
17,141 + 14479 mRNA_6111 0.69 +0.3
17,177 - 14479 mRNA_6111 0.71 +0.1
17,181 + 14479 mRNA_6111 0.71 +0.3
17,236 + 14479 mRNA_6111 0.75 +0.8
17,259 + 14479 mRNA_6111 0.76 -2.4
17,567 + -3.2
17,865 - -1.1
18,020 - 14480 mRNA_6112 0.14 -0.5
18,077 + 14480 mRNA_6112 0.17 -0.4
18,276 + 14480 mRNA_6112 0.26 -1.7
18,462 + 14480 mRNA_6112 0.35 +0.4
18,464 - 14480 mRNA_6112 0.35 -2.2
18,586 + 14480 mRNA_6112 0.41 +1.4
18,589 - 14480 mRNA_6112 0.41 +0.4
18,596 + 14480 mRNA_6112 0.41 -0.1
18,598 - 14480 mRNA_6112 0.41 -0.8

Or see this region's nucleotide sequence