Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6175

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14542 and 14543 are separated by 261 nucleotides mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176,764 to 178,095 14542 mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910 14543

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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177,712 + 14542 mRNA_6174 0.71 -0.0
178,108 - +0.1
178,194 + -1.4
178,223 + -0.7
178,250 + -0.0
178,526 + -1.9
178,918 + 14543 mRNA_6175 0.22 -0.5
179,309 + 14543 mRNA_6175 0.37 +0.6
179,350 - 14543 mRNA_6175 0.39 -2.3
179,401 + 14543 mRNA_6175 0.41 -1.1
179,546 + 14543 mRNA_6175 0.47 -1.6
179,550 - 14543 mRNA_6175 0.47 +0.6
179,723 - 14543 mRNA_6175 0.53 -1.8
179,817 + 14543 mRNA_6175 0.57 +0.9
179,860 - 14543 mRNA_6175 0.59 -1.4
180,227 + 14543 mRNA_6175 0.73 -0.1
180,234 - 14543 mRNA_6175 0.73 +0.9
180,241 - 14543 mRNA_6175 0.74 -1.1
180,433 - 14543 mRNA_6175 0.81 +0.6
180,548 + 14543 mRNA_6175 0.86 -1.1
180,548 + 14543 mRNA_6175 0.86 -1.0
180,715 + -1.6
180,861 + -0.5
180,987 - +0.2
181,023 - -0.8
181,173 - -0.9
181,182 + -0.3
181,190 - -1.2
181,315 - -1.7
181,321 - +1.0
181,338 - -0.5
181,360 - -0.3
181,361 + -0.1
181,394 - +0.8
181,493 - -0.6
181,517 - +0.2
181,529 - -0.1
181,802 - -0.8

Or see this region's nucleotide sequence