Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6203

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14570 and 14571 are separated by 317 nucleotides14571 and 14572 are separated by 176 nucleotides mRNA_6202: 14570 - KOG4475 FOG Immunoglobin and related proteins, at 237,374 to 240,451 14570 mRNA_6203: 14571 - HMMPfam-HbrB-like-PF08539, at 240,769 to 243,130 14571 mRNA_6204: 14572 - KOG1618 Predicted phosphatase, at 243,307 to 244,867 14572

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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240,174 - +0.6
240,418 - -0.2
240,617 - -1.4
240,827 - -0.2
240,993 + -0.4
241,014 + 14571 mRNA_6203 0.10 -0.9
241,036 + 14571 mRNA_6203 0.11 -0.4
241,041 + 14571 mRNA_6203 0.12 +0.7
241,156 - 14571 mRNA_6203 0.16 -0.0
241,167 - 14571 mRNA_6203 0.17 -0.7
241,739 - 14571 mRNA_6203 0.41 -0.6
241,744 + 14571 mRNA_6203 0.41 -0.7
241,876 - 14571 mRNA_6203 0.47 -1.8
241,914 + 14571 mRNA_6203 0.48 -0.5
242,245 + 14571 mRNA_6203 0.62 -0.6
242,920 - -0.6
243,072 - -0.0
243,082 + -0.8
243,200 + +1.7
243,232 + -1.0
243,240 + +0.3
243,242 + +0.3
243,268 + -0.3
243,394 - +0.0
243,512 + 14572 mRNA_6204 0.13 +1.7
243,765 + 14572 mRNA_6204 0.29 +0.3
243,925 - 14572 mRNA_6204 0.40 -2.1
243,956 + 14572 mRNA_6204 0.42 +2.1
243,996 - 14572 mRNA_6204 0.44 +0.6

Or see this region's nucleotide sequence