Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6287

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14654 and 14655 are separated by 483 nucleotides14655 and 14656 are separated by 290 nucleotides mRNA_6286: 14654 - HMMPfam-Protein of unknown function (DUF3128)-PF11326, at 444,214 to 444,568 14654 mRNA_6287: 14655 - K01262 pepP Xaa-Pro aminopeptidase, at 445,052 to 447,744 14655 mRNA_6288: 14656 - KOG0876 Manganese superoxide dismutase, at 448,035 to 449,039 14656

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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444,722 - -1.7
444,853 - -0.1
444,867 - +0.6
444,868 - -0.1
444,872 + -0.8
444,978 + +0.1
445,014 - -1.1
445,015 - +0.4
445,021 - -0.7
445,036 - -2.6
445,050 - -1.7
445,052 - -1.9
445,059 + -1.1
445,144 + -0.6
445,168 - +1.9
445,177 - +1.1
445,177 + -0.5
445,209 + -0.3
445,212 + +0.6
445,221 - +1.0
445,287 + -0.3
445,333 - 14655 mRNA_6287 0.10 +1.4
445,347 - 14655 mRNA_6287 0.11 -0.7
445,351 + 14655 mRNA_6287 0.11 -0.6
445,670 + 14655 mRNA_6287 0.23 -2.9
445,726 + 14655 mRNA_6287 0.25 -0.3
445,759 - 14655 mRNA_6287 0.26 +1.0
445,767 - 14655 mRNA_6287 0.27 -0.8
446,147 + 14655 mRNA_6287 0.41 -0.3
446,331 + 14655 mRNA_6287 0.47 -0.4
446,660 - 14655 mRNA_6287 0.60 +1.1
446,680 + 14655 mRNA_6287 0.60 +0.3
447,210 - 14655 mRNA_6287 0.80 +0.5
447,778 - +0.2
447,957 + -0.3
448,489 - 14656 mRNA_6288 0.45 -1.4
448,520 + 14656 mRNA_6288 0.48 -0.7

Or see this region's nucleotide sequence