Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6388

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14755 and 14756 are separated by 887 nucleotides14756 and 14757 are separated by 376 nucleotides mRNA_6387: 14755 - Hypothetical Protein, at 692,168 to 693,043 14755 mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693,931 to 695,622 14756 mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695,999 to 699,737 14757

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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692,980 - +1.1
693,174 + +0.7
693,265 - +0.7
693,410 - -0.4
693,412 + +0.1
693,436 + -1.6
693,440 - -0.0
693,443 - -1.6
693,569 + -1.8
693,597 + -1.0
693,735 - -0.4
693,748 + -1.5
693,872 + -1.1
693,874 - +0.1
693,885 + -1.1
693,890 + +1.6
693,891 - +0.4
694,208 + 14756 mRNA_6388 0.16 -1.0
694,321 + 14756 mRNA_6388 0.23 -0.4
694,494 + 14756 mRNA_6388 0.33 -0.4
694,764 - 14756 mRNA_6388 0.49 +3.3
694,934 + 14756 mRNA_6388 0.59 -0.3
694,937 + 14756 mRNA_6388 0.59 -0.8
695,746 - -0.9
695,808 - +0.2
695,910 + -1.0
695,918 - -0.2
696,012 - +0.5
696,369 - -2.1

Or see this region's nucleotide sequence