Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6413

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14780 and 14781 are separated by 198 nucleotides14781 and 14782 are separated by 768 nucleotides mRNA_6412: 14780 - HMMPfam-F-box-like-PF12937, at 750,026 to 751,228 14780 mRNA_6413: 14781 - K08490 STX5 syntaxin 5, at 751,427 to 753,086 14781 mRNA_6414: 14782 - K15731 CTDSP carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, at 753,855 to 754,896 14782

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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750,471 - 14780 mRNA_6412 0.37 -0.4
750,660 + 14780 mRNA_6412 0.53 +0.4
751,093 - 14780 mRNA_6412 0.89 -0.1
751,128 + -1.0
751,135 - +0.1
751,420 + +1.3
753,002 + -1.2
753,183 + +0.4
753,275 + +0.5
753,428 + +0.3

Or see this region's nucleotide sequence