Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6475

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14842 and 14843 are separated by 211 nucleotides14843 and 14844 are separated by 227 nucleotides mRNA_6474: 14842 - HMMPfam-Vitamin-D-receptor interacting Mediator subunit 4-PF10018, at 871,729 to 872,994 14842 mRNA_6475: 14843 - KOG3442 Uncharacterized conserved protein, at 873,206 to 873,968 14843 mRNA_6476: 14844 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 874,196 to 881,716 14844

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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872,833 - 14842 mRNA_6474 0.87 +0.4
873,150 + -0.3
873,165 - -2.0
873,169 - -1.2
873,188 + +0.7
874,051 - +0.3
874,061 + +0.4
874,082 + +0.8
874,278 + -0.2
874,370 - +1.6
874,662 - -0.5

Or see this region's nucleotide sequence