Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6488

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14855 and 14856 are separated by 355 nucleotides14856 and 14857 are separated by 394 nucleotides mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902,586 to 904,816 14855 mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905,172 to 907,549 14856 mRNA_6489: 14857 - KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases, at 907,944 to 911,303 14857

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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904,618 + +0.1
904,857 - +0.3
904,883 - -3.0
904,883 - -2.1
904,897 - -0.8
904,899 + -0.3
904,899 - -1.5
904,922 - -1.3
904,923 + -0.0
904,994 + +0.3
904,998 - -1.4
905,047 - -1.4
905,050 + +0.0
905,059 + +1.3
905,073 - -0.1
905,075 - -0.5
905,089 - -0.6
905,091 - -0.4
905,092 + -1.2
905,093 + -0.2
905,110 - +0.8
905,408 - -1.9
905,562 + 14856 mRNA_6488 0.16 -1.6
907,277 - 14856 mRNA_6488 0.89 -5.6
907,654 + -3.9
907,770 + +0.8
907,797 - -0.6
907,831 + -3.0
907,895 - -0.8
908,062 - +0.1
908,078 + +0.0
908,123 - +0.0
908,235 - +0.4
908,378 + 14857 mRNA_6489 0.13 -0.4

Or see this region's nucleotide sequence