Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6700

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15067 and 15068 are separated by 341 nucleotides15068 and 15069 are separated by 151 nucleotides mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,479,159 to 1,480,660 15067 mRNA_6700: 15068 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1,481,002 to 1,482,828 15068 mRNA_6701: 15069 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,482,980 to 1,485,101 15069

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,480,212 + 15067 mRNA_6699 0.70 -0.9
1,480,270 - 15067 mRNA_6699 0.74 +0.6
1,480,447 - 15067 mRNA_6699 0.86 +0.9
1,480,454 + 15067 mRNA_6699 0.86 +1.0
1,480,763 - +0.3
1,480,884 + +0.3
1,480,885 - -2.6
1,481,291 + 15068 mRNA_6700 0.16 -0.1
1,481,886 + 15068 mRNA_6700 0.48 -0.5
1,482,021 - 15068 mRNA_6700 0.56 +0.9
1,482,370 + 15068 mRNA_6700 0.75 +1.4
1,482,661 - -0.2
1,482,668 - -0.7
1,482,686 - -2.1
1,482,802 + -3.4
1,482,812 + -0.5
1,482,815 - +1.0
1,483,046 - -0.1
1,483,054 + +0.6
1,483,056 - -1.5
1,483,112 - +0.4
1,483,296 - 15069 mRNA_6701 0.15 -1.0
1,483,303 - 15069 mRNA_6701 0.15 +0.8
1,483,382 + 15069 mRNA_6701 0.19 -1.5
1,483,430 + 15069 mRNA_6701 0.21 -1.2
1,483,686 + 15069 mRNA_6701 0.33 -0.7

Or see this region's nucleotide sequence