Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6727

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15094 and 15095 are separated by 156 nucleotides15095 and 15096 are separated by 343 nucleotides mRNA_6726: 15094 - Hypothetical Protein, at 1,736 to 3,438 15094 mRNA_6727: 15095 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 3,595 to 4,704 15095 mRNA_6728: 15096 - K14309 NUP93, NIC96 nuclear pore complex protein Nup93, at 5,048 to 8,579 15096

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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2,889 - 15094 mRNA_6726 0.68 +0.3
2,898 + 15094 mRNA_6726 0.68 -0.2
2,928 + 15094 mRNA_6726 0.70 +1.5
2,957 - 15094 mRNA_6726 0.72 -0.9
3,026 + 15094 mRNA_6726 0.76 -1.3
3,149 + 15094 mRNA_6726 0.83 +0.5
3,291 + -2.0
3,296 - -0.8
3,335 + -0.8
3,462 + -3.6
3,566 - +0.6
3,745 + 15095 mRNA_6727 0.14 -0.1
3,751 - 15095 mRNA_6727 0.14 +0.2
3,878 + 15095 mRNA_6727 0.25 +0.1
4,005 + 15095 mRNA_6727 0.37 -0.3
4,612 - +0.7
4,639 + -1.6
4,774 - +1.2
4,889 - +2.3
4,914 + -3.4
4,918 - +0.7
4,980 - +0.1
5,104 + +1.1
5,529 - 15096 mRNA_6728 0.14 -0.8

Or see this region's nucleotide sequence