Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6768

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15135 and 15136 are separated by 180 nucleotides15136 and 15137 are separated by 310 nucleotides mRNA_6767: 15135 - KOG0393 Ras-related small GTPase, Rho type, at 89,121 to 90,132 15135 mRNA_6768: 15136 - HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573, at 90,313 to 94,205 15136 mRNA_6769: 15137 - K01953 asnB, ASNS asparagine synthase (glutamine-hydrolysing), at 94,516 to 96,583 15137

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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90,222 + +0.5
90,236 - -2.1
90,249 + +0.0
90,251 + -0.2
90,389 - -0.3
90,401 + -0.1
90,550 + -1.0
90,963 + 15136 mRNA_6768 0.17 +1.8
91,477 + 15136 mRNA_6768 0.30 -1.8
91,756 - 15136 mRNA_6768 0.37 -2.8
91,857 - 15136 mRNA_6768 0.40 -0.0
93,664 - 15136 mRNA_6768 0.86 -1.9
94,112 + -0.8
94,199 + +0.0
94,203 - -0.6
94,211 + -1.2
94,526 - +0.4
94,992 + 15137 mRNA_6769 0.23 +0.2

Or see this region's nucleotide sequence