Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6819

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15185 and 15186 are separated by 451 nucleotides15186 and 15187 are separated by 171 nucleotides15187 and 15188 are separated by 202 nucleotides mRNA_6817: 15185 - KOG3525 Subtilisin-like proprotein convertase, at 203,064 to 206,112 15185 mRNA_6818: 15186 - KOG0729 26S proteasome regulatory complex, ATPase RPT1, at 206,564 to 206,841 15186 mRNA_6819: 15187 - SUPERFAMILY--SSF103107, at 207,013 to 207,504 15187 mRNA_6820: 15188 - K00931 proB glutamate 5-kinase, at 207,707 to 209,492 15188

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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206,044 - -1.4
206,810 + 15186 mRNA_6818 0.88 -0.3
207,205 + 15187 mRNA_6819 0.39 -2.1
207,368 - 15187 mRNA_6819 0.72 -0.7
207,378 + 15187 mRNA_6819 0.74 -0.7
207,383 + 15187 mRNA_6819 0.75 -1.2
207,401 + 15187 mRNA_6819 0.79 +0.7
207,410 + 15187 mRNA_6819 0.81 -0.3
207,479 - -1.3
207,518 + -1.0
207,525 - +0.4
207,527 - +1.6
207,532 - -1.7
207,564 + -0.4
207,589 - -0.5
207,682 - -0.5

Or see this region's nucleotide sequence